rs241954787 SNP Detail

Summary

• ID
  rs241954787
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:66683240 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGCAAAGG AGTTTGCCCA
  GAGTAGCACA GTCCTTTGAT GGCAAACCTG AATTTTTTTC CTAGGTACTC CAATCCTAGA
  TCTGTTTAAA AGGGGGCTAT CCAAGTAGAT TTCAGTGTGT CTGTTCCACA AATTATCACT
  ACACTTCTAG AGTATGCTAA GTATCATGAA TAACATCCAG TAACTGGAAA ATATATTCTA
  W
  CAGAAGTTGC CAGAACTCCC ATTCCTCCCA CTGCCACACA GCTCAGTTGA ATAGTCTTGC
  AACTCAGCAT CTTCTAGCAA CCCTTAAAAG GCAACAAGAC CTTTGTCCGT CGTCCTTTGT
  ACTCACCAAG ACTCTTTCTT TCCCTGTGAA GGCCCTTAGA GCTCCAAGCT GCTCATATCT
  CCCAACCAGC TAGATGACTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394379508	MGP_WTSI_15_66642953	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241954787					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394379508	MGP_WTSI_15_66642953	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:66683240 () rs orientation: forward

Symbol	Name	Function Class
Rr503566	regulatory region 503566	994 bp distal
Rr503567	regulatory region 503567	417 bp distal
Rr503568	regulatory region 503568	within coordinates
Rr503569	regulatory region 503569	514 bp proximal
Rr503570	regulatory region 503570	1192 bp proximal
Sla	src-like adaptor	within coordinates
Tg	thyroglobulin	within coordinates
Tssr131484	transcription start site region 131484	843 bp upstream
Tssr131485	transcription start site region 131485	969 bp upstream
Tssr134583	transcription start site region 134583	1248 bp upstream
Tssr134584	transcription start site region 134584	764 bp upstream
Tssr134585	transcription start site region 134585	667 bp downstream
Tssr134586	transcription start site region 134586	721 bp downstream
Tssr134587	transcription start site region 134587	796 bp downstream
Tssr134588	transcription start site region 134588	1246 bp downstream
Tssr134589	transcription start site region 134589	1268 bp downstream
Tssr134590	transcription start site region 134590	1294 bp downstream
Tssr134591	transcription start site region 134591	1325 bp downstream
Tssr134592	transcription start site region 134592	1806 bp downstream