rs241961172 SNP Detail

Summary

• ID
  rs241961172
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57368172 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAAGACAC AGTCTCTCTA
  TGTAGCCACG GAATTTACTA TGTAGACCGG GCTGATCTGG ACCTCACAGA GCTCCACCTG
  GGATCTAAGG CGTATGCTAC ACTACAATGG GTGTTGTATA TAGCCTTGTA TGTGCTAGAT
  AAACTAGCCA CAGAACTCCA GCTGCAGCTC TATGGCTATT GTTGTTATTG TCCTTTTGAG
  Y
  CAAGGTCTCT GTAGCCTCGC TGGCCTTGAA TGTGCAGCAG TTCGCCTGCT TCGGAATCCC
  AGTTGCTGGG ACGGCAATCA CGTGCCATCA TATCCGGTGC ATGACCACCT TTTACCCAAA
  GATACATCCA GAGGTCATGC GGTCCCCACC CAAGCTGTGC CCATACATCT GTGGTGAACA
  GGTGAAAGTC CCACCCACTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398569755	MGP_WTSI_17_57200595	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241961172					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398569755	MGP_WTSI_17_57200595	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57368172 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9390	CpG island 9390	1214 bp distal
Cpgi9391	CpG island 9391	349 bp distal
Cpgi9392	CpG island 9392	792 bp proximal
Crb3	crumbs family member 3	411 bp upstream
Rr405393	regulatory region 405393	710 bp downstream
Rr529261	regulatory region 529261	819 bp distal
Rr529262	regulatory region 529262	569 bp proximal
Rr529263	regulatory region 529263	1138 bp proximal
Slc25a23	solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23	1309 bp upstream
Tssr145365	transcription start site region 145365	415 bp downstream
Tssr145366	transcription start site region 145366	1088 bp upstream
Tssr145367	transcription start site region 145367	1145 bp upstream
Tssr145368	transcription start site region 145368	1181 bp upstream
Tssr145369	transcription start site region 145369	1314 bp upstream
Tssr145370	transcription start site region 145370	1353 bp upstream
Tssr148875	transcription start site region 148875	1315 bp upstream
Tssr148876	transcription start site region 148876	817 bp downstream