rs241966406 SNP Detail

Summary

• ID
  rs241966406
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:74815260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCATGTGG TTGCTGGGAA
  TTTTAGGACC TTTGGATCAA CTCTGCTTGC TCTGGTAGGA CCAGCTCTCT CTAGTCAACT
  CCTCTCACTC CAGACGCACC AGAAGAGGGC GCCAGATCTC ATTACAGATG GTTGTGAGCC
  ACGTGGTTTC TGGAATTTGA ACTCAGGACC TTTGGTCCTG AGCAGGTCAG TGCTCTTACC
  M
  GCTGAGTCAT CTTGCCAGCC CCAGCAAAGC AGTTTTTATA TTTCCTATTC CTCTCAAATC
  TTTTGACAAA AACTGCCATT TGTTCTGGCC ACTCTAATTA ATTATACCCA TTCATTTGAG
  CTGTTGACTA TTTCTCAGTC ATTGTCTTTC TCTCTCTCTC TCTCTCTCTT TTTTGGTTTT
  TCGAGACAGG GTTTTTCTGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383890584	MGP_WTSI_11_74737936	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241966406					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383890584	MGP_WTSI_11_74737936	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:74815260 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3250	CpG island 3250	969 bp proximal
Gm72316	predicted gene, 72316	1665 bp upstream
Rr451006	regulatory region 451006	829 bp distal
Rr451007	regulatory region 451007	627 bp distal
Rr451008	regulatory region 451008	within coordinates
Rr451009	regulatory region 451009	85 bp distal
Rr451010	regulatory region 451010	474 bp proximal
Rr451011	regulatory region 451011	1329 bp proximal
Rr451012	regulatory region 451012	1504 bp proximal
Rr451013	regulatory region 451013	1574 bp proximal
Rr451014	regulatory region 451014	1676 bp proximal
Smg6	SMG6 nonsense mediated mRNA decay factor	1405 bp upstream
Srr	serine racemase	within coordinates
Tssr102917	transcription start site region 102917	1382 bp upstream
Tssr102918	transcription start site region 102918	1403 bp upstream
Tssr102919	transcription start site region 102919	1444 bp upstream
Tssr102920	transcription start site region 102920	1647 bp upstream
Tssr109155	transcription start site region 109155	1224 bp downstream
Tssr109156	transcription start site region 109156	1491 bp downstream