rs241970319 SNP Detail

Summary

• ID
  rs241970319
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:46654208 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAATGTGA TTTTTAACAT
  CGACAGTTGT GGTAGTTTGT ATGTAACTGG CTCCATTAGG CCCATAAGGG AGTGGCATGA
  TTAGGAGGTG TGGCTTTCTT AGAGTGGGTG TGGCCTTGCT GATGGAGTCA CTGTGGAGGT
  TGGCTTTCAG GTGTTATATG CTCAGGCTAT ATCCAGTGTG GTATGCAGTC TCCTCTTGCT
  R
  TCTGGAGATC AAGATGTAGA ACTTTCAGCT GCTTCTCCAG CACCATGTCT ACCTGCGTGC
  CACAGGCTTC ATGCTATGAT GATAATGGAC TGAACTTCTG ACTAATACCC AACCCCAACT
  AAATATTTTA TTTTATAAGA GTTGCTGTGG TCGCTGGGCC GTGGTGGCAC ACGCCTTTAA
  TCCCAGCACT TGGGAGGCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	KK/HlJ	LEWES/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	RF/J	RIIIS/J	SEA/GnJ	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss388503878	MGP_WTSI_13_46596101	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	KK/HlJ	LEWES/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	RF/J	RIIIS/J	SEA/GnJ	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs241970319					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388503878	MGP_WTSI_13_46596101	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:46654208 () rs orientation: forward

Symbol	Name	Function Class
Cap2	cyclase associated actin cytoskeleton regulatory protein 2	1171 bp upstream
Cpgi5539	CpG island 5539	1051 bp proximal
Gm35110	predicted gene, 35110	within coordinates
Rr478915	regulatory region 478915	945 bp proximal
Rr478916	regulatory region 478916	1127 bp proximal
Rr478917	regulatory region 478917	1228 bp proximal
Rr478918	regulatory region 478918	1673 bp proximal
Tssr119597	transcription start site region 119597	1127 bp upstream
Tssr119598	transcription start site region 119598	1166 bp upstream
Tssr119599	transcription start site region 119599	1305 bp upstream
Tssr119600	transcription start site region 119600	1317 bp upstream
Tssr119601	transcription start site region 119601	1381 bp upstream
Tssr119602	transcription start site region 119602	1409 bp upstream