rs241971546 SNP Detail

Summary

• ID
  rs241971546
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142131380 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTGCTGG ATCCCATGGT
  CTCTGCCACT GTCTCCAAGG ACTCCTATCA CCTCCCTGGA GGCAGCGGCC TCAGTCTTTA
  CTGGCAACCC TGCACCTCTT CTTTCTTCTC TCTAAGAGCT CTTTCCACCT GGGGTCGCCA
  ATGGTCCCCC AGCCTCCTTC TGTCTCGGCT CCCCCCGAGA CGATGTCTCC TTTGCTAACT
  R
  TCCTGCCTTT CTATGTGCCA TTCTGCTGCG AGGCCAGCCG CTTCTTCTCA CCAGGCCCCC
  TCTCTAAACC TTCGTTTAGA AGGTCAGTGG AGCGAGGCCA AGAGAGAAGA AGGAGACTCA
  CCTGCCCAGC AGACGGCGGT CCTCACCTGC CCACTGCTGC CAGCTATACC TTCACTGCCC
  AGGTCTGGGG TCGAACCCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373453173	MGP_WTSI_7_149763548	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241971546					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373453173	MGP_WTSI_7_149763548	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142131380 () rs orientation: forward

Symbol	Name	Function Class
Gm56420	predicted gene, 56420	720 bp downstream
Gm56421	predicted gene, 56421	206 bp upstream
H19	H19, imprinted maternally expressed transcript	within coordinates
Mir675	microRNA 675	496 bp upstream
Rr658231	regulatory region 658231	492 bp proximal
Rr658232	regulatory region 658232	1616 bp proximal
Tssr2460	transcription start site region 2460	383 bp downstream
Tssr2461	transcription start site region 2461	268 bp upstream
Tssr70213	transcription start site region 70213	1572 bp downstream
Tssr70214	transcription start site region 70214	990 bp downstream
Tssr70215	transcription start site region 70215	667 bp downstream
Tssr70216	transcription start site region 70216	603 bp downstream
Tssr70217	transcription start site region 70217	586 bp downstream
Tssr70218	transcription start site region 70218	236 bp downstream
Tssr70219	transcription start site region 70219	198 bp downstream
Tssr70220	transcription start site region 70220	86 bp downstream
Tssr70221	transcription start site region 70221	47 bp downstream
Tssr70222	transcription start site region 70222	within coordinates
Tssr70223	transcription start site region 70223	130 bp upstream
Tssr70224	transcription start site region 70224	187 bp upstream
Tssr70225	transcription start site region 70225	225 bp upstream
Tssr70226	transcription start site region 70226	322 bp upstream
Tssr70227	transcription start site region 70227	394 bp upstream
Tssr70228	transcription start site region 70228	417 bp upstream
Tssr75815	transcription start site region 75815	1850 bp upstream
Tssr75816	transcription start site region 75816	1789 bp upstream
Tssr75817	transcription start site region 75817	1626 bp upstream
Tssr75818	transcription start site region 75818	1550 bp upstream
Tssr75819	transcription start site region 75819	1380 bp upstream
Tssr75820	transcription start site region 75820	1329 bp upstream
Tssr75821	transcription start site region 75821	1316 bp upstream
Tssr75822	transcription start site region 75822	1155 bp upstream
Tssr75823	transcription start site region 75823	1112 bp upstream
Tssr75824	transcription start site region 75824	1079 bp upstream
Tssr75825	transcription start site region 75825	955 bp upstream
Tssr75826	transcription start site region 75826	907 bp upstream
Tssr75827	transcription start site region 75827	887 bp upstream
Tssr75828	transcription start site region 75828	755 bp upstream
Tssr75829	transcription start site region 75829	265 bp upstream
Tssr75830	transcription start site region 75830	238 bp upstream
Tssr75831	transcription start site region 75831	217 bp upstream
Tssr75832	transcription start site region 75832	151 bp upstream
Tssr75833	transcription start site region 75833	74 bp upstream
Tssr75834	transcription start site region 75834	187 bp downstream
Tssr75835	transcription start site region 75835	223 bp downstream
Tssr75836	transcription start site region 75836	245 bp downstream
Tssr75837	transcription start site region 75837	265 bp downstream
Tssr75838	transcription start site region 75838	342 bp downstream
Tssr75839	transcription start site region 75839	355 bp downstream
Tssr75840	transcription start site region 75840	397 bp downstream
Tssr75841	transcription start site region 75841	399 bp downstream
Tssr75842	transcription start site region 75842	436 bp downstream
Tssr75843	transcription start site region 75843	443 bp downstream
Tssr75844	transcription start site region 75844	450 bp downstream
Tssr75845	transcription start site region 75845	496 bp downstream