rs241973210 SNP Detail

Summary

• ID
  rs241973210
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113880197 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAATA GATAAGAGGG TGAAGCACTT
  S
  GAACCACTGC TTCAGCCATA GAGAA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss639705903	FVB_NJ_2_113875452	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	G	C	C	C	G	C	G	G	C	C	C	C	C	C	C	G	C	G	G	C	C	G	C	G	C	C	C	C	C	G	G	G	C	C	C	C	G	G	G	C	C	C	G	C	G	G	G	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241973210					SNP	C	C	C	C	G	C	C	C	G	C	G	G	C	C	C	C	C	C	C	G	C	G	G	C	C	G	C	G	C	C	C	C	C	G	G	G	C	C	C	C	G	G	G	C	C	C	G	C	G	G	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss639705903	FVB_NJ_2_113875452	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113880197 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	within coordinates
Rr562816	regulatory region 562816	1907 bp distal
Tssr602	transcription start site region 602	761 bp downstream
Tssr19433	transcription start site region 19433	1552 bp downstream
Tssr19434	transcription start site region 19434	1508 bp downstream
Tssr19435	transcription start site region 19435	538 bp downstream
Tssr19436	transcription start site region 19436	134 bp downstream
Tssr19437	transcription start site region 19437	569 bp upstream
Tssr19438	transcription start site region 19438	652 bp upstream
Tssr19439	transcription start site region 19439	717 bp upstream
Tssr25666	transcription start site region 25666	1545 bp upstream
Tssr25667	transcription start site region 25667	1502 bp upstream
Tssr25668	transcription start site region 25668	1475 bp upstream
Tssr25669	transcription start site region 25669	1412 bp upstream
Tssr25670	transcription start site region 25670	474 bp upstream
Tssr25671	transcription start site region 25671	411 bp upstream
Tssr25672	transcription start site region 25672	394 bp upstream
Tssr25673	transcription start site region 25673	363 bp upstream
Tssr25674	transcription start site region 25674	117 bp upstream
Tssr25675	transcription start site region 25675	85 bp upstream
Tssr25676	transcription start site region 25676	62 bp upstream
Tssr25677	transcription start site region 25677	37 bp upstream
Tssr25678	transcription start site region 25678	620 bp downstream
Tssr25679	transcription start site region 25679	629 bp downstream
Tssr25680	transcription start site region 25680	642 bp downstream
Tssr25681	transcription start site region 25681	689 bp downstream
Tssr25682	transcription start site region 25682	771 bp downstream
Tssr25683	transcription start site region 25683	778 bp downstream
Tssr25684	transcription start site region 25684	869 bp downstream
Tssr25685	transcription start site region 25685	1239 bp downstream
Tssr25686	transcription start site region 25686	1582 bp downstream