rs241980277 SNP Detail

Summary

• ID
  rs241980277
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:6094917 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTTTAGGA GATTTCACTC
  CTCTTTTCCT GTTCAGTGGT CTCTTTGGTC GGCAGGGTGT TCTCCTGCGT CTCGGTTTTC
  TTCAGCTTGC CCTTATTGAA GCTGGCGATT TCCCCTATGT CCGGCTTGTC TGCCATTTTC
  TTACAACTCG TGGATTCTCC TTCCAAGCTT GCGCTCCAGG TGCTCCCACT CTCGTTGCTG
  Y
  AGCAAGAGAC CTTATTTTGT TTTTCGAGAC AGGGTTTCTC TGTGTAGCCC TGGCTGTCCT
  AGAACTCACT CTGTAGACCA GGCTGGCCTC GAACTCAGAA ATCCGCCTGC CTCTGCCTCC
  CGAGTGCTGG GATTAAAGGT AGGCGCCACC ACGCCCAGCT TTTTTTTTTT TAGATAGGAT
  CTCACTCTAT AGCTGTACGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401668067	MGP_WTSI_19_6044887	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241980277					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401668067	MGP_WTSI_19_6044887	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:6094917 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10491	CpG island 10491	1327 bp proximal
D530017H19Rik	RIKEN cDNA D530017H19 gene	within coordinates
Gm8034	predicted gene 8034	65 bp upstream
Gm59262	predicted gene, 59262	1215 bp upstream
Rr370438	regulatory region 370438	1421 bp upstream
Rr405816	regulatory region 405816	406 bp downstream
Rr405817	regulatory region 405817	836 bp upstream
Rr543275	regulatory region 543275	447 bp distal
Rr543276	regulatory region 543276	583 bp distal
Rr543277	regulatory region 543277	898 bp proximal
Rr543278	regulatory region 543278	1172 bp proximal
Rr543279	regulatory region 543279	1786 bp proximal
Syvn1	synovial apoptosis inhibitor 1, synoviolin	1689 bp upstream
Tssr154538	transcription start site region 154538	1217 bp upstream
Tssr154539	transcription start site region 154539	1742 bp upstream
Tssr157816	transcription start site region 157816	3 bp downstream