rs241989994 SNP Detail

Summary

• ID
  rs241989994
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:103366027 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCGTCACA ATAACTCAGC
  TCCCCCTCAC CGCTCTCCTG GACCATCCCC TTCCTTTGGA CCATCTGTCT TCCTTTGTGG
  GCACACCGAG TGAAGCCCCA GTAATCCCTG TGCTCTTGGG AAGGCTTCCT CCCCTGGGCC
  CACTGCACCT CATCTAGTAC TATTTTTAAT TCGGTTTGCT TTTGAGTGAC ACCAGGCTTC
  R
  TCTAGTCTCC GGGGCCACAG CTCAGAATTG GAAGTCTCCT GAGAGCAAGT TTTCCTCTTC
  GGTCCCCAGA GACTGCTTGC TACAAAACCA GTCCTCGATA AACATTTGTT ACTTATTCCC
  AGATTGGAGA AGTTCTGAGA ACAGCTTTCC CAACTCCAGT GTGCAGAAAG CACCTGGGTT
  GGTGGTGGTG GTAGTGGTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378747931	MGP_WTSI_9_103391158	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241989994					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378747931	MGP_WTSI_9_103391158	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:103366027 () rs orientation: forward

Symbol	Name	Function Class
Gm16252	predicted gene 16252	within coordinates
Rr192235	regulatory region 192235	1374 bp proximal
Rr207116	regulatory region 207116	within coordinates
Tmem108	transmembrane protein 108	within coordinates
Tssr91216	transcription start site region 91216	473 bp downstream
Tssr91217	transcription start site region 91217	493 bp downstream
Tssr91218	transcription start site region 91218	521 bp downstream