rs241990529 SNP Detail

Summary

• ID
  rs241990529
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112977987 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCGCAGGGA GCGTGAGGGG
  TTCGTAGACC TGGTCACTCC CGCAGCCATC ACGTCGCTCG CCTGAGTCCC TGAGAGGGGC
  ACAGCCTGTG CGCCGCCGCG CGCGCTCGCT CCCGCGGCTG GGCGCCGGAG ACGCCCTGGG
  GCGCGCGCCT CACTTCCGGT GGGCGGTGAT TGGGTGCGCC GCGCGAGCCC TGCCCCGTCG
  R
  CCAATAGGCG GCGCGGTGCG GCAGGGGGCG GGGCGCGGGC GCAGCCTGGA CACCGCCCGC
  GGGCCTGCCG GACTCCCGCC GCCCGCCGGC GCCATGTGAC CGCGCCGCCG CCCTCCGCGC
  GCCCGGCCCG CCCGCCCGCC GCGCTCCCGC GGCCCGGCGC AGCCCCAGGC CGCCGAGGGA
  CGGCGGGGCC GGCGCCATGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss387397472	MGP_WTSI_12_114252578	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs241990529					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387397472	MGP_WTSI_12_114252578	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112977987 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5198	CpG island 5198	within coordinates
Gm61130	predicted gene, 61130	59 bp upstream
Pacs2	phosphofurin acidic cluster sorting protein 2	141 bp upstream
Tssr115451	transcription start site region 115451	18 bp upstream
Tssr115452	transcription start site region 115452	135 bp upstream
Tssr115453	transcription start site region 115453	148 bp upstream
Tssr115454	transcription start site region 115454	179 bp upstream
Tssr115455	transcription start site region 115455	192 bp upstream
Tssr117933	transcription start site region 117933	104 bp upstream