rs241992513 SNP Detail

Summary

• ID
  rs241992513
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:13838840 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTTATTTA GCCTCACTTC
  CCATGGGGTT TTTCTTGGGG GTAGTAGTAT GCAGTTTTCT AACCAACGTC ATCTTTAGCT
  TTGGAGGGAG AATTTTTCAC TTATTATACT ACCCATCTTA TAAGCAATCA AATATCCAGA
  TTGTGAGCAG TGTGCTTGGG AATATAGATA TACAATATGA ATTATAAGAG AGATTTGCTT
  R
  GATCAGTGGT ACACCTTTCC AAGAGAAGCT GAAACAGCAG GCCAGGCAGG TGAGACGTGT
  GGGGAAGATG AAGATGAGGA GGGGGGAGAC AGGAGCCCAA TGTCCCACTG GGCATCTGGC
  TTTGGAATGG CTAGTACTGG TTTACACTTT GTGCACAGTG GCTTGCAAGA GACAAATCTT
  GGGCCTATTA GAGAGAAAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss379498323	MGP_WTSI_10_13682902	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241992513					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss379498323	MGP_WTSI_10_13682902	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:13838840 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1318	CpG island 1318	1447 bp proximal
Gm56954	predicted gene, 56954	972 bp downstream
Gm66890	predicted gene, 66890	1524 bp upstream
Rr384171	regulatory region 384171	968 bp upstream
Rr427854	regulatory region 427854	1034 bp proximal
Rr427855	regulatory region 427855	1535 bp proximal
Tssr92402	transcription start site region 92402	1530 bp upstream
Tssr92403	transcription start site region 92403	1700 bp upstream
Tssr92404	transcription start site region 92404	1731 bp upstream
Tssr92405	transcription start site region 92405	1753 bp upstream
Tssr92406	transcription start site region 92406	1918 bp upstream