rs241992604 SNP Detail

Summary

• ID
  rs241992604
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:114391916 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCGGGTGGT GCGCATGGTG
  CCGGTGGTTG CTGTGGCCGC CCGCGCCCCC GGGGCCGCCG CCCGCGCGCC CGTTCTTGGG
  CGGCGGCTCT TCGGCGGTGG CCACCACGGC GTCCAGCAGG TTGCTGAGCA GGAAGGCGGA
  GGATGGCAGC GCGTCCATGC CCGCCGCCTC GGCCAGGACC ACCTTCTGGT CACATACGGG
  R
  CAGCGCAGCT TCAGCGCCTC GGCGGGGCCC GCGCCTCCGG GAGCGGGCAG CCGGTGCGCC
  TCGAGGCACG GCCGGCAGAA GGCGTGCAGG CAGGGCAAGA CGTGAAGACG CCGCGCCGCC
  GCCCCGGGGC CGCCGCCGCC CGCCGACGAC GTGGAAGTCT GCGAGGACGA CGACGAGGCG
  GACGAGTTGG AGGAGAGCGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss379005638	MGP_WTSI_9_114471966	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241992604					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss379005638	MGP_WTSI_9_114471966	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:114391916 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22423	CpG island 22423	1147 bp distal
Cpgi22424	CpG island 22424	within coordinates
Rr383952	regulatory region 383952	812 bp upstream
Rr687643	regulatory region 687643	1086 bp distal
Rr687644	regulatory region 687644	1511 bp proximal
Trim71	tripartite motif-containing 71	within coordinates
Tssr91844	transcription start site region 91844	394 bp downstream
Tssr91845	transcription start site region 91845	421 bp downstream
Tssr91846	transcription start site region 91846	439 bp downstream
Tssr91847	transcription start site region 91847	1238 bp downstream
Tssr91848	transcription start site region 91848	1349 bp downstream
Tssr91849	transcription start site region 91849	1440 bp downstream
Tssr91850	transcription start site region 91850	1467 bp downstream
Tssr91851	transcription start site region 91851	1490 bp downstream