rs241993094 SNP Detail

Summary

• ID
  rs241993094
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:4217921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCAGCCTG CACGGCCTGC
  AAGGGGTTCA GCTCAGAGTT CTAGGCTCCA GTGGGCCAAT GGACACCAAC CAAGTTAAGA
  ATCTGGCCGG TCCTGGAAAG GGGAGGACGG TTTATTTCTC TTCCCCTCTG CTGGACCTAA
  TACCATCCAT CTAGGGTACC AGGAGGGATG AGGCTAGATG GTTGAGTGCC CCCGCCCCCC
  M
  GACCTAGCTT TCAGTTGGTA CAAATGGCTC CCACCTTGAT ACCTTGCCTC TTAATCCAGT
  GGCATAGATG GGGAAACTGA GGCCTGGGAG CAGGGAAAGA GAAAGCCAGA GAGCCAGGGA
  ACCTCAGTAG AGCAGGAGAC TAAAGGCTGA TGGAGGGTGG GAGGGGGCAG GAAGGGCCTC
  GCTGAGGTGC CCCCCCAACC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
ss382256038	MGP_WTSI_11_4167924	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	C	A	A	A	A	A	A	A	C	C	A	A	C	A	A	C	A	A	A	A	C	C	A	A	A	A	A	C	A	C	C	A	C	C	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
rs241993094					SNP	A	A	A	A	C	A	A	A	A	A	A	A	C	C	A	A	C	A	A	C	A	A	A	A	C	C	A	A	A	A	A	C	A	C	C	A	C	C	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382256038	MGP_WTSI_11_4167924	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:4217921 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2511	CpG island 2511	791 bp distal
D11Mit16	DNA segment, Chr 11, Massachusetts Institute of Technology 16	1639 bp proximal
D11Mit16.1	DNA segment, Chr 11, Massachusetts Institute of Technology 16.1	1579 bp proximal
D11Mit16.2	DNA segment, Chr 11, Massachusetts Institute of Technology 16.2	1773 bp proximal
Lif	leukemia inhibitory factor	within coordinates
Rr385518	regulatory region 385518	within coordinates
Rr441799	regulatory region 441799	816 bp distal
Rr441800	regulatory region 441800	285 bp distal
Rr441801	regulatory region 441801	645 bp proximal
Tssr100122	transcription start site region 100122	1424 bp downstream
Tssr100123	transcription start site region 100123	1377 bp downstream
Tssr100124	transcription start site region 100124	1248 bp downstream