rs242000499 SNP Detail

Summary

• ID
  rs242000499
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113878562 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTCCCCCC CCCCCCACAC
  ACACACCGTG TTTCAGATAT TTGCTTTTAT TCACTATTTA GAAGCAGTCC TAAAGTTCCG
  TATCTGTGGA GAGTGCTAGA AAGAAATGAG GAATAGTGCT AACACTAAGT AGAAAAAGTC
  TAGAGGATAG GAAGCTAAGA TGCAGGAGAA GGAGGCTGGG AAGGAAGCTT GCTTTAGGGT
  R
  CCAAGTTCTG CCTTTGCCTC CCCCTTCCAA GTGTTCCTGA CCTTGATCTT CATGGTGCTG
  GGAGCCAGTG CAGTGATTTC CTTTTGCATA CGATCGGCAA TACCAGGGTA CATGGTGGTG
  CCTCCAGATA GGACATTGTT GGCATACAGG TCTTTGCGGA TATCGATGTC ACACTTCATG
  ATGCTGTTGT AAGTAGTTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355315530	MGP_WTSI_2_113873817	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242000499					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355315530	MGP_WTSI_2_113873817	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113878562 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	within coordinates
Rr562816	regulatory region 562816	272 bp distal
Tssr600	transcription start site region 600	512 bp upstream
Tssr601	transcription start site region 601	501 bp upstream
Tssr19429	transcription start site region 19429	784 bp downstream
Tssr19430	transcription start site region 19430	674 bp downstream
Tssr19431	transcription start site region 19431	590 bp downstream
Tssr19432	transcription start site region 19432	507 bp downstream
Tssr19433	transcription start site region 19433	40 bp upstream
Tssr19434	transcription start site region 19434	93 bp upstream
Tssr19435	transcription start site region 19435	1088 bp upstream
Tssr19436	transcription start site region 19436	1469 bp upstream
Tssr25660	transcription start site region 25660	763 bp upstream
Tssr25661	transcription start site region 25661	742 bp upstream
Tssr25662	transcription start site region 25662	639 bp upstream
Tssr25663	transcription start site region 25663	613 bp upstream
Tssr25664	transcription start site region 25664	572 bp upstream
Tssr25665	transcription start site region 25665	464 bp upstream
Tssr25666	transcription start site region 25666	72 bp downstream
Tssr25667	transcription start site region 25667	99 bp downstream
Tssr25668	transcription start site region 25668	135 bp downstream
Tssr25669	transcription start site region 25669	164 bp downstream
Tssr25670	transcription start site region 25670	1120 bp downstream
Tssr25671	transcription start site region 25671	1163 bp downstream
Tssr25672	transcription start site region 25672	1232 bp downstream
Tssr25673	transcription start site region 25673	1267 bp downstream
Tssr25674	transcription start site region 25674	1471 bp downstream
Tssr25675	transcription start site region 25675	1519 bp downstream
Tssr25676	transcription start site region 25676	1556 bp downstream
Tssr25677	transcription start site region 25677	1583 bp downstream