rs242001228 SNP Detail

Summary

• ID
  rs242001228
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:4761728 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGTCAGGC ATAGCAGGTT
  GTGGGGTTTC TCGGTCAAGG CTAGTGGCAC TCAGCGGGAA GGAGGCTGAG GTGACTGAGA
  CTAGCCTGGA TCTTGAAGGA TGAGTTGGGT ACTGATGGGC AAAGGATTCC AGAAAGGCAT
  CCCTAGTAGG CAACACAGCC TGGAGGAGGA ACGAATTCTG GCTGCTAATG CCAGAGCACT
  R
  GCAGGTGATA GGAGTTAGTC CAGGGCTAAA GCTCTAGTTG ATTAGAGAGA CACACATCAG
  GAGCTGGAAG CATAGCCAAT GGCAGAGCGT GGTTAAGAAG CATGGGGGTC CATTTCCAGC
  ATCAGAGAGT GTGTGAGAAT AGACAGAAGC CCTACAGCAT TGCCTTTTCA CTGTGGTGGT
  CGTCTACATT CCCAGAGTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323874778	CHEV_12_4718534	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242001228					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:4761728 () rs orientation: forward

Symbol	Name	Function Class
Fam228a	family with sequence similarity 228, member A	1942 bp downstream
Gm53750	predicted gene, 53750	within coordinates
Itsn2	intersectin 2	within coordinates
Rr260648	regulatory region 260648	1928 bp distal
Rr260649	regulatory region 260649	1073 bp proximal
Tssr112576	transcription start site region 112576	608 bp upstream
Tssr112577	transcription start site region 112577	627 bp upstream
Tssr115645	transcription start site region 115645	487 bp downstream