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rs242001228 SNP Detail
Summary
  • ID
    rs242001228
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr12:4761728 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ACTGTCAGGC ATAGCAGGTT
    GTGGGGTTTC TCGGTCAAGG CTAGTGGCAC TCAGCGGGAA GGAGGCTGAG GTGACTGAGA
    CTAGCCTGGA TCTTGAAGGA TGAGTTGGGT ACTGATGGGC AAAGGATTCC AGAAAGGCAT
    CCCTAGTAGG CAACACAGCC TGGAGGAGGA ACGAATTCTG GCTGCTAATG CCAGAGCACT
    R
    GCAGGTGATA GGAGTTAGTC CAGGGCTAAA GCTCTAGTTG ATTAGAGAGA CACACATCAG
    GAGCTGGAAG CATAGCCAAT GGCAGAGCGT GGTTAAGAAG CATGGGGGTC CATTTCCAGC
    ATCAGAGAGT GTGTGAGAAT AGACAGAAGC CCTACAGCAT TGCCTTTTCA CTGTGGTGGT
    CGTCTACATT CCCAGAGTAA                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss323874778 CHEV_12_4718534 CHEVERUD SCREENING_POP f SNP A G
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs242001228 SNP A G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr12:4761728 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Fam228a family with sequence similarity 228, member A 1942 bp downstream
Gm53750 predicted gene, 53750 within coordinates
Itsn2 intersectin 2 within coordinates
Rr260648 regulatory region 260648 1928 bp distal
Rr260649 regulatory region 260649 1073 bp proximal
Tssr112576 transcription start site region 112576 608 bp upstream
Tssr112577 transcription start site region 112577 627 bp upstream
Tssr115645 transcription start site region 115645 487 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory