rs242001664 SNP Detail

Summary

• ID
  rs242001664
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:128814224 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGAGTTGA CACTCTGAGA
  AGGAGAACCA GAAGATCACA AAATAGTGAG GTGGTCTTAG CATAGTAAAG TCAGTTGGGA
  GGTGTTGGAG AAACTGGCCC TCTAGTTTGG GAACATGGCT TCTTCCTAGA TAGGAATTTG
  AGGGCCCCAG ATGTGATGGG CTGGAGTGGG GAGCCTTTGA AATGGTAGAT GATTGGCACC
  K
  TGAATTATTA CCATCTTTTA TGGTCCTCTC ACTGCAAGAT CTGATGCTAG CCAGAGCAGT
  ATGCAGCCCC CTCTTGCTGC AGAACTGTGG CCCACAACAG GGAGTTAGCA TCTTTACTAT
  TCTTAAGAAC TTCATGCAAT AGCTTTTTTG TTGTTGTTGT TTTGTTTTGC TAGCTGGAAC
  AAGTTTTTGT CTCTAACCTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366668491	MGP_WTSI_5_129243035	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242001664					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366668491	MGP_WTSI_5_129243035	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:128814224 () rs orientation: forward

Symbol	Name	Function Class
4930553I04Rik	RIKEN cDNA 4930553I04 gene	1131 bp upstream
Cpgi16665	CpG island 16665	758 bp distal
Gm71554	predicted gene, 71554	1099 bp upstream
Piwil1	piwi-like RNA-mediated gene silencing 1	within coordinates
Tssr1644	transcription start site region 1644	999 bp downstream
Tssr48983	transcription start site region 48983	1067 bp downstream
Tssr48984	transcription start site region 48984	1028 bp downstream
Tssr48985	transcription start site region 48985	973 bp downstream
Tssr48986	transcription start site region 48986	913 bp downstream
Tssr53471	transcription start site region 53471	1142 bp upstream