rs242003999 SNP Detail

Summary

• ID
  rs242003999
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:175458340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGAAATA CATCAAGGTT
  TCAGAACAGT GGGAACACTG GGAAAATAGA AATATGACCA CGAAGCTGGA GCTACAGGAC
  AAAATCCAGA TGGATCTTAA GAAGCACAAA GCTGAGGAAG AAGTCATTTA TGAGACAAAA
  CATGGCTTGA AGAAATAGCC CATGGTAACT AGAATGCTCG CTTAGCATGT GTGAGGCCTG
  R
  GGCAGCAGAC TACTGGAAAG CTGGTGCTAT TTTCTTTCTT GGACTCTGTG AAAGGCACAC
  GCTGTGCTGG AAACTATTGT ACTGTACATT TATTCTTAAG TACTTTACTT GCATGTGCAA
  TACTCCTTCA TTTTTAAAAA GCTTCTAAAA AGACACGTTT TTCTCTATAT TGATACTGAA
  GTAAATTGAA AGAAAAATTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352481871	MGP_WTSI_1_177560905	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	G	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242003999					SNP	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	G	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352481871	MGP_WTSI_1_177560905	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:175458340 () rs orientation: forward

Symbol	Name	Function Class
Kmo	kynurenine 3-monooxygenase	1419 bp upstream
Rr396618	regulatory region 396618	1044 bp upstream
Rr423839	regulatory region 423839	732 bp proximal
Tssr10313	transcription start site region 10313	1194 bp upstream
Tssr10314	transcription start site region 10314	1222 bp upstream
Tssr10315	transcription start site region 10315	1241 bp upstream
Tssr10316	transcription start site region 10316	1270 bp upstream
Tssr10317	transcription start site region 10317	1290 bp upstream
Tssr10318	transcription start site region 10318	1322 bp upstream
Tssr10319	transcription start site region 10319	1330 bp upstream
Tssr10320	transcription start site region 10320	1346 bp upstream
Tssr10321	transcription start site region 10321	1367 bp upstream
Tssr10322	transcription start site region 10322	1381 bp upstream
Tssr10323	transcription start site region 10323	1395 bp upstream