rs242011066 SNP Detail

Summary

• ID
  rs242011066
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:8930764 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGTTCCACA TTCTTGAATG
  AATGTCCTTA TCTCTTACCA CTGTAGTCAG TTCTTCATTG TACTGCCTTG AAACGGGCCT
  CGTTAATATA CTTCATTCAG ACTACATCTG TGGAAGAAAC TGGCAGACTA AGCTATCAGC
  CATCTGGCAT TGCGCTCATT GAATCCAGCT GATGGGGGTG GGAGAGACAG GGATGGACAG
  M
  TCTGAGAACA CTTGTAGAAG GATCAGGCTG CAGAGAAAGG AACTGACCTG AGGATGCGGG
  AGTCCCTGAG CTCCACAAGG CAAGCGATTG GAAACACCCA CCCTCTGCGT CTATTCGCAG
  GGTAAAATAA GAGATTGAGG GGGCAGTTGT GTGGTGAAAT AAAGGCATAG ATCGCCCGCC
  ACCACTTGGC AAAGAAGGAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401710847	MGP_WTSI_19_9027890	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	A	C	C	C	C	C	A	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242011066					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	A	C	C	C	C	C	A	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401710847	MGP_WTSI_19_9027890	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:8930764 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10588	CpG island 10588	60 bp proximal
Gm59132	predicted gene, 59132	within coordinates
Mta2	metastasis-associated gene family, member 2	1105 bp downstream
Rr359578	regulatory region 359578	1764 bp distal
Rr363780	regulatory region 363780	within coordinates
Rr405849	regulatory region 405849	166 bp upstream
Tssr154900	transcription start site region 154900	1315 bp downstream
Tssr154901	transcription start site region 154901	426 bp upstream
Tssr154902	transcription start site region 154902	461 bp upstream
Tssr154903	transcription start site region 154903	486 bp upstream
Tssr154904	transcription start site region 154904	577 bp upstream
Tut1	terminal uridylyl transferase 1, U6 snRNA-specific	447 bp upstream