rs242020574 SNP Detail

Summary

• ID
  rs242020574
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32092262 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTGGCCCTT GGGTGAGCAG TGGTTAAGAA
  ATCCTGGCTT TTGTGGCTTT GTGAGAGCTT TTAGTGGCTA TTCCAAAACC GAGCTTGGCA
  CGATCCCCAC AGGTGTCGCT TGGGCTCGGT TCCTCCACAC AGAAGGCGTT AGTCTGAGCA
  Y
  CTGTTTACCT GCCAGGCACT GCAGCATACA CTTTCTGGGT CTCTTACCTG CTGTCTTACT
  GATGGGAAGG GAGTAAAGAA GTTCCTGCTC CATGCACAGC GCCCCCTATG GGTGGCCTGG
  GAACTTGGCT ATGCAGTTGG TGCAGGTCAT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325136261	CHEV_16_32273530	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242020574					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32092262 () rs orientation: forward

Symbol	Name	Function Class
Gm60870	predicted gene, 60870	within coordinates
Rr514670	regulatory region 514670	1966 bp distal
Rr514671	regulatory region 514671	1838 bp distal
Rr514672	regulatory region 514672	26 bp proximal
Rr514673	regulatory region 514673	1620 bp proximal
Smco1	single-pass membrane protein with coiled-coil domains 1	within coordinates
Tssr137957	transcription start site region 137957	1921 bp downstream
Tssr137958	transcription start site region 137958	1900 bp downstream
Tssr137959	transcription start site region 137959	1885 bp downstream