rs242028272 SNP Detail

Summary

• ID
  rs242028272
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:4165978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTAAAGACT GAAATGTAAA
  GAAGCTATTG CAGTTGACAG TCACCCACAG GAGGTGGACC ACATGGAGAG GAACAAAAAA
  GCTTTAATTT GATATAAAAG CCAGAGCTCT CATGTGGTAC CTTTCCTGAC TTTGTTTTCT
  CTTCCATTGT ATATGGGGGG AGGAAGTGAA TTAAAAGAGC TTTTGTGGGG CTAGAGAGAA
  S
  GCTCAGCTGC TAAAGGGTAG GCTCACAACC ACAACGAGCT TTGGGAGGTG GATGTGATGC
  ACATGCCTTT AATCTCAGTG TACAGAAGGC AGAGGTAAGT GGATCTTTAT AAGTCTAAGG
  CCAGCCTGGT CTACATAGAG AGTTTCAGGC CAGCCAGGAC TACATAGTGA AATTCGGTCT
  CTTGGGGGGA AAAAGCTCTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322093634	CHEV_7_4114581	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242028272					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:4165978 () rs orientation: forward

Symbol	Name	Function Class
Cdc42ep5	CDC42 effector protein 5	within coordinates
Gm73056	predicted gene, 73056	873 bp upstream
Rr641923	regulatory region 641923	402 bp proximal
Rr641924	regulatory region 641924	884 bp proximal
Rr641925	regulatory region 641925	1871 bp proximal
Tssr70452	transcription start site region 70452	1268 bp downstream
Tssr70453	transcription start site region 70453	1522 bp downstream
Tssr70454	transcription start site region 70454	1682 bp downstream
Tssr70455	transcription start site region 70455	1705 bp downstream
Tssr70456	transcription start site region 70456	1741 bp downstream
Tssr70457	transcription start site region 70457	1817 bp downstream