rs242031659 SNP Detail

Summary

• ID
  rs242031659
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:116388071 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAACAGGC AAATTACTAA
  TCTACAAGTC TAAACAAACA AACAAAAATT GTTTCTAAGT TTCTTCCCCA TGCATTCACA
  AGTGGTTATC GTTCAAAAAC AATAACTATA ATTAATTAGA ACCCAGTTAA TAAAACCTAG
  TGATCTTTTT CAAGCACTCC TTTATAAAAA TAATCACTTC CCCTGAGGAT GGGGGACTAG
  Y
  GGAAGGAAGG ATGAGTGTAA GGGTCTCTGA GACAGCAGAG GGAGCTTTTA GTACAAGAAA
  GCAATGCTCC TCGGGGGCTC CTCGCGGCTC CGAGCGGTGG GCAGAACTGC ATTTACTTAA
  ATCCATGGGA CGGAAGCAGG AACCTGTCAA AGGGGCGAGA CTGGGGTCCA GCACCCACAG
  ACCCGCGACT CCCAGGAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320895807	CHEV_3_116297340	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242031659					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116388071 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13737	CpG island 13737	54 bp proximal
Rr397965	regulatory region 397965	341 bp upstream
Rr583746	regulatory region 583746	28 bp proximal
Rr583747	regulatory region 583747	325 bp proximal
Rr583748	regulatory region 583748	406 bp proximal
Rr583749	regulatory region 583749	599 bp proximal
Rr583750	regulatory region 583750	767 bp proximal
Sass6	SAS-6 centriolar assembly protein	560 bp upstream
Trmt13	tRNA methyltransferase 13	within coordinates
Tssr31360	transcription start site region 31360	537 bp upstream
Tssr35316	transcription start site region 35316	394 bp downstream
Tssr35317	transcription start site region 35317	426 bp downstream