rs242039965 SNP Detail

Summary

• ID
  rs242039965
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:37695981 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTCAGGAA GAATACGTTA
  TAAATTGGAA GCTATTTCCT TTTGACATGG AAGTTGTGTT TGTTGTCTAT CAGTGTATTT
  ATTTTACTAC AAAAAGCAGG TCAATTCAGG GCTTGTGAAA ATCAAGGTCT GTCGTGCTAA
  TAAATGAAGG GAATTAAATA TAATGTAAAA AGACCAGGGC TCCTCTCCCT GCTTTAAAGG
  R
  CTGACACTTG TGCATAAGTT ATCCTCGTTG TGTGGGGGAG CCTTGATTAA CCTTTAAGGA
  AAGCTAAGTC CACACCGTCC GGGTTGTGTT CTTTGTGGCA GAGCACTCTT CATTCTTTGT
  AGCTTCCTTT GCTCGTCTCA CAGATCTGTG TGATGAGCTA GCTTCAGACC CGGACTTCTG
  CTGAAAATGG CCTTTTGAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357588080	MGP_WTSI_3_37540754	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242039965					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357588080	MGP_WTSI_3_37540754	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37695981 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13100	CpG island 13100	416 bp distal
Gm42922	predicted gene 42922	607 bp upstream
Rr575523	regulatory region 575523	1742 bp distal
Rr575524	regulatory region 575524	369 bp distal
Rr575525	regulatory region 575525	1035 bp distal
Rr575526	regulatory region 575526	927 bp distal
Spry1	sprouty RTK signaling antagonist 1	Intron
Tssr28909	transcription start site region 28909	1920 bp downstream
Tssr28910	transcription start site region 28910	1889 bp downstream
Tssr28911	transcription start site region 28911	1868 bp downstream
Tssr28912	transcription start site region 28912	1846 bp downstream
Tssr28913	transcription start site region 28913	1434 bp upstream
Tssr28914	transcription start site region 28914	1892 bp upstream