rs242040748 SNP Detail

Summary

• ID
  rs242040748
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:25144663 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGTGTTCTC CTGGTGAAAT
  GGCTGATAAC AAAAGTCTTA AAAGATCTTG TAGACTTCTT CTTGTGCAAA AGAAAAAGAG
  AAAGTAAAAA GAAAAAAAAA AGTCCCCAAA TGCCTGCAAA AGATTGGGAG AGAAAGGCAG
  TTTAGGAGAA TGTAACCTAA GGGCAGAGGC GGGCGAGCCT GGCGCCGAGG AAGCCACAGT
  K
  TGAGCATTTA ACCAAACCCT GGCGTCCAGA TGCGGCACAC ATACCCGGCC CCAGCAGCAC
  AAATTAAACA TGAAAATAGC GGAGACTCCA GGGGAAAACT TCCCAAACCC AGTCTCCTAT
  TTGGATCTCT AACAGCCCGC TCACAGGCGC CAGTCTGCTT CTTGTAACAA TTATTTGATT
  GAAAACAGCC CTTTAGTTAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss385325222	MGP_WTSI_12_25779529	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242040748					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385325222	MGP_WTSI_12_25779529	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:25144663 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4499	CpG island 4499	1630 bp distal
Cpgi4500	CpG island 4500	823 bp proximal
Gm59395	predicted gene, 59395	1796 bp upstream
Id2	inhibitor of DNA binding 2	within coordinates
Rr369501	regulatory region 369501	1438 bp downstream
Rr403250	regulatory region 403250	1398 bp upstream
Rr463952	regulatory region 463952	877 bp distal
Rr463954	regulatory region 463954	1413 bp proximal
Rr463955	regulatory region 463955	1807 bp proximal
Tssr112979	transcription start site region 112979	1053 bp upstream
Tssr112980	transcription start site region 112980	1773 bp upstream
Tssr112981	transcription start site region 112981	1788 bp upstream
Tssr115883	transcription start site region 115883	134 bp upstream
Tssr115884	transcription start site region 115884	1057 bp downstream
Tssr115885	transcription start site region 115885	1416 bp downstream