rs242041160 SNP Detail

Summary

• ID
  rs242041160
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:40905167 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGACGCCCG CGAGGACCCA
  GCGGCAGCCG GCCCGGAGGA CAAGCCGCCG CCGCCGCCGC CAAAGGGGAA CCCGTGGACC
  AAGAAGCTGC CGCAGCACCT GTCCACCGTG GGCACCGGCG TGCCGTCGCC CGCTCAGGAC
  TCCCCGGAGG CCGGTGAGTG CGGTCCGCGG GAGGTGTTTG GTTCCTAGGT GTCATTCACC
  R
  TGCCGATTTA CATAAATGGA CATCTAGGAG AGGGAGCGAC AGGAAGAGGT GGGACCTCAG
  GTTCTCCTTG ACGGGTAGGG GCACGACGTG GGTGACTGGG CAGCGGGGCT GTGCTGGGCT
  CGTGCCTTCA CGTGTCGGCG TCCTAGACGC GGTGAATACC GTGGAAAAGT TTCCGGGAAC
  TTGACACAGA GTAGAGGCGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357671140	MGP_WTSI_3_40754654	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	A	G	G	G	G	A	G	G	G	G	A	G	A	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242041160					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	A	G	G	G	G	A	G	G	G	G	A	G	A	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357671140	MGP_WTSI_3_40754654	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40905167 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13115	CpG island 13115	within coordinates
Gm64655	predicted gene, 64655	1207 bp upstream
Larp1b	La ribonucleoprotein 1B	within coordinates
Rr397652	regulatory region 397652	919 bp downstream
Rr575871	regulatory region 575871	1218 bp distal
Rr575872	regulatory region 575872	894 bp distal
Rr575873	regulatory region 575873	657 bp distal
Rr575874	regulatory region 575874	within coordinates
Rr575875	regulatory region 575875	71 bp proximal
Rr575876	regulatory region 575876	824 bp proximal
Tssr28976	transcription start site region 28976	918 bp downstream
Tssr28977	transcription start site region 28977	880 bp downstream
Tssr28978	transcription start site region 28978	792 bp downstream
Tssr28979	transcription start site region 28979	776 bp downstream
Tssr28980	transcription start site region 28980	764 bp downstream
Tssr28981	transcription start site region 28981	314 bp downstream
Tssr28982	transcription start site region 28982	75 bp downstream
Tssr28983	transcription start site region 28983	47 bp upstream