rs242042642 SNP Detail

Summary

• ID
  rs242042642
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:62495956 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTGGACTTG GGCAAAGATT CCAAAGCATT
  TAAGGCACCC ACACTCAATC CCTGTTCTTG GCTGCAGTGC CATGCAAAGA CGCCATCTTG
  TTTGCTTACC TGGCCTGTAA GGCTGTTCTT CCCCATAACC CCATGAGTTC AGACTTTGAC
  Y
  ACTTAATTCA GAACAGTTCT CTTGGGCTTG AGTTGGGGAC TAGGAGTGTT TAAGGGTGTT
  AGGAACACCC AGTTTTCCCT CTTTGCTAAG TAGGACTGGT TCTAGAGGTG AGTTTTTGAA
  AAGCCAATAC AGGGACTAGA TTATGGGAGG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323704027	CHEV_11_62418632	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242042642					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:62495956 () rs orientation: forward

Symbol	Name	Function Class
2410006H16Rik	RIKEN cDNA 2410006H16 gene	324 bp downstream
Cpgi3027	CpG island 3027	1627 bp distal
Lrrc75a	leucine rich repeat containing 75A	within coordinates
Lrrc75aos2	leucine rich repeat containing 75A, opposite strand 2	600 bp upstream
Rr235283	regulatory region 235283	1245 bp proximal
Rr246930	regulatory region 246930	within coordinates
Snord49a	small nucleolar RNA, C/D box 49A	1609 bp downstream
Snord49b	small nucleolar RNA, C/D box 49B	1982 bp downstream
Snord65	small nucleolar RNA, C/D box 65	544 bp downstream
Tssr102051	transcription start site region 102051	1964 bp downstream
Tssr102052	transcription start site region 102052	1938 bp downstream
Tssr102053	transcription start site region 102053	1673 bp downstream
Tssr102054	transcription start site region 102054	598 bp upstream