rs242047328 SNP Detail

Summary

• ID
  rs242047328
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:117662822 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACCG CCAGGGTGGG CCATGGAGAT
  C
  CAGAGGACAG GAGGTGGTGT TCTCG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320900610	CHEV_3_117572091	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242047328					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:117662822 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13747	CpG island 13747	within coordinates
Gm56798	predicted gene, 56798	within coordinates
Rr583874	regulatory region 583874	1879 bp distal
Rr583875	regulatory region 583875	within coordinates
Rr583876	regulatory region 583876	3 bp proximal
Rr583877	regulatory region 583877	17 bp proximal
Snx7	sorting nexin 7	237 bp upstream
Tssr31404	transcription start site region 31404	124 bp downstream
Tssr35382	transcription start site region 35382	252 bp upstream
Tssr35383	transcription start site region 35383	229 bp upstream