rs242058709 SNP Detail

Summary

• ID
  rs242058709
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:4299272 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTCTTGTG AGGTCACTGC
  CTGCACCTTG TGCCCTGGCT GTCTTCCTGT GCCCATAAAG GAAGTGGCTT GTTGCCCCCT
  CCCAGACATG CTCCCTTTTC GCCCTCCTGT GGATTCTCCC ATTAGCCATT TGGTCTCACT
  CTTAAGGCCA GTTGAAGATG GTCCCTTACG GTTTCTCAAA TTAGGTTAGT GATGTGAAAT
  K
  CTCCTGTCCC TACCTCCTTC CCGAGCCCCA TCCCTGCAGA AGGCAACTGC TGGGTTTCCA
  ATTCTTTTCC AAGTTCATTT TGTTTATCCT GCTCCGCAAT CCCCTGAGCC AGAAGTGGAG
  GCTTACATTC TCAAACCCTG AGTGTCTAGC CTTTTCCCTG TTGGATTCTT AGTTTCTTGT
  GCTATGCCTA GTGGCACCCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324213509	CHEV_13_4248519	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242058709					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:4299272 () rs orientation: forward

Symbol	Name	Function Class
Akr1c19	aldo-keto reductase family 1, member C19	912 bp downstream
Gm61344	predicted gene, 61344	within coordinates
Marcksl1-ps4	MARCKS-like 1, pseudogene 4	248 bp downstream
Rr283540	regulatory region 283540	472 bp distal
Tssr118223	transcription start site region 118223	432 bp upstream