rs242058915 SNP Detail

Summary

• ID
  rs242058915
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135301132 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAACAGGA ACAGAGGAAG
  CAGCAGATGG TGGTGGCAAC CACAGCAACA AAGAGGATTA CAGCAGAGGC GATGCCTGCT
  ATGGTCTTGG GACTTTAGAC AAAAAACAGG TCCTCTCACC TTCCAACATT CATAAGAGGA
  ACTCCTCACG GAGCTGACTC CAACTCTTGG CCAGCAGGGA GCCACAGCAT GCTATGTCTT
  R
  GGGTTCCCTG TGGGATTAAT TCTGCCCACC TTGTTAAGTA GCTCTAAGAG ACCTCTACTT
  CCCAGGAGGC CATGCTGTCT GGGTAGCTGG CATGAGGCAT GCTGGGATTT GTAGTGTGCC
  CACCTACCAC TGCTTTTATA TTGGTTAGGT TTAAAGTATG TTGGCCTCAA TGGAGCCTTT
  GAAATAATGA AGGGCCATTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351539930	MGP_WTSI_1_137269971	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242058915					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351539930	MGP_WTSI_1_137269971	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135301132 () rs orientation: forward

Symbol	Name	Function Class
Cpgi790	CpG island 790	1042 bp proximal
Rr28595	regulatory region 28595	within coordinates
Rr28596	regulatory region 28596	468 bp proximal
Shisa4	shisa family member 4	within coordinates
Tssr13840	transcription start site region 13840	1506 bp upstream
Tssr13841	transcription start site region 13841	1062 bp upstream
Tssr13842	transcription start site region 13842	184 bp upstream
Tssr13843	transcription start site region 13843	15 bp downstream
Tssr13844	transcription start site region 13844	33 bp downstream
Tssr13845	transcription start site region 13845	74 bp downstream
Tssr13846	transcription start site region 13846	564 bp downstream
Tssr13847	transcription start site region 13847	1025 bp downstream
Tssr13848	transcription start site region 13848	1525 bp downstream
Tssr13849	transcription start site region 13849	1542 bp downstream
Tssr13850	transcription start site region 13850	1561 bp downstream
Tssr13851	transcription start site region 13851	1705 bp downstream
Tssr13852	transcription start site region 13852	1829 bp downstream
Tssr13853	transcription start site region 13853	1839 bp downstream
Tssr13854	transcription start site region 13854	1856 bp downstream
Tssr13855	transcription start site region 13855	1874 bp downstream
Tssr13856	transcription start site region 13856	1888 bp downstream