rs242060415 SNP Detail

Summary

• ID
  rs242060415
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:35727346 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCACTATCC TATAGTTGGC
  AGAAATTGAT GGCTATCCTT ACCATATTCC CATTAATACA TTCAGTTAGC AACGTGCTCT
  GGGGATAGCT GTACTCATGG TATGGGTCAA AGATATGGAA ATGAGTTATT CCAGAAGCAT
  CTAGAATATA ACAAGTAGAA TATAGACTTC ACTACTGTGG CTTAACATTG CGACTTAACT
  K
  ATAACAGTAG AGAGTGACTC TCAGCACCGT GGATCTACAG CAGCGGATGC TGGATCTCAG
  TAATTCGGTC TACAATAGCA AACACTGGAT AAACAATGCA GGGCTTTAGT TTCCAAAGTC
  TTGTCTTTAA TTCTTTTCTT CCAGTGCTGG GATTAAGCCC AGGGCTTTGT GTTTGCTAAG
  CCACACTACT ATTCTATTGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382990300	MGP_WTSI_11_35650021	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242060415					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382990300	MGP_WTSI_11_35650021	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:35727346 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2730	CpG island 2730	1775 bp distal
Cpgi2731	CpG island 2731	1918 bp proximal
Rr402482	regulatory region 402482	1848 bp downstream
Rr402483	regulatory region 402483	1834 bp upstream
Rr445144	regulatory region 445144	1547 bp distal
Rr445145	regulatory region 445145	1900 bp distal
Rr445146	regulatory region 445146	805 bp proximal
Rr445147	regulatory region 445147	1674 bp proximal
Tssr107409	transcription start site region 107409	1989 bp upstream
Tssr107410	transcription start site region 107410	491 bp upstream
Wwc1	WW, C2 and coiled-coil domain containing 1	1881 bp downstream