rs242066819 SNP Detail

Summary

• ID
  rs242066819
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:51302739 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTGCCTCT TGCAAGCTGA
  CCTCAGAGCA CATGCAGGTT CTGATGGGTG CGTGCCTATG CCTCTAAGCC TGTGCTTGTG
  GGAGAGATGG GGTGGGGGAG TGGGGGGGAG GGAGGGATGG AGAGAGAGAG GGAGAGAGAG
  AGAGAGGGAG GGAGGGAGGG AGAGAGAGGG GGGGGGGAGG GAGGGAGGGA GAGAGAGAGA
  K
  TTTTCTGTGG AGGATGAGGT CAGTCTCATC TCTTTCTTTA TCTGAGCACC AGAACAGTCC
  CCATTATAAT CAGTTTAAAA TAAATGGCGT CTCCTCACTT CTGCAAGTTG CTCTCTTATG
  AGGTATACAC ATACAGAGGG GAAAGGCGTT CTAGTACTTG TGGGAAGACT TCTTTTAAGC
  ATCATTTAAA AGAATAGGTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	SEA/GnJ	SPRET/EiJ	ST/bJ	SWR/J
ss357929582	MGP_WTSI_3_51199240	EVA_MGPV3	EVA_MGPV3	f	SNP	T	G	G	G	G	G	T	G	G	G	G	T	T	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	SEA/GnJ	SPRET/EiJ	ST/bJ	SWR/J
rs242066819					SNP	T	G	G	G	G	G	T	G	G	G	G	T	T	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357929582	MGP_WTSI_3_51199240	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51302739 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13137	CpG island 13137	1019 bp proximal
Mgarp	mitochondria localized glutamic acid rich protein	within coordinates
Rr576308	regulatory region 576308	1198 bp proximal
Tssr33205	transcription start site region 33205	417 bp upstream
Tssr33206	transcription start site region 33206	1185 bp downstream
Tssr33207	transcription start site region 33207	1210 bp downstream
Tssr33208	transcription start site region 33208	1398 bp downstream