rs242069871 SNP Detail

Summary

• ID
  rs242069871
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:24558318 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGACCTCTA ACATGACAAT
  ACCTGAAAAG GTTTTACTTT GTATTAGTAG AAATCAAAGG ATTACTGAAA TAAGTGTGTG
  TGCGCGTGTG TGTCAATAAA TTCATCATTA TTAAGCAGTT TACATTCTTG TGTGTCTAGT
  GATAGGGGTC CTTTCCAGAC ACCTATGTGT GGATAATTTG TGGGACCCAG GCTTCCTTTT
  W
  ACCTGGTGCC TTGCCTCTGA GAAGAATTCC AAAGAGAACG GGCTAGGTGG ATGACCTGCA
  GTGGCAGACC ATTGGCAGAG GAAGTGGATC TCTGCCCTTG TCTCAAAAGG CACTGATGAG
  AAGCGGTGAC AGGACTGGAA ACAGAGCTCA CCCTTTCCCT CAATGACCCA CATCTTCCAG
  CTGGGTCCCA CAGCCCACAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324295891	CHEV_13_24466204	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242069871					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:24558318 () rs orientation: forward

Symbol	Name	Function Class
Cmah	cytidine monophospho-N-acetylneuraminic acid hydroxylase	Intron
Gm11342	predicted gene 11342	within coordinates
Rr476038	regulatory region 476038	264 bp proximal
Rr476039	regulatory region 476039	1006 bp proximal
Rr476040	regulatory region 476040	1605 bp proximal
Tssr4016	transcription start site region 4016	1715 bp upstream
Tssr118891	transcription start site region 118891	818 bp downstream
Tssr118892	transcription start site region 118892	1699 bp upstream
Tssr118893	transcription start site region 118893	1735 bp upstream
Tssr118894	transcription start site region 118894	1799 bp upstream
Tssr118895	transcription start site region 118895	1833 bp upstream
Tssr121784	transcription start site region 121784	1607 bp downstream
Tssr121785	transcription start site region 121785	1627 bp downstream
Tssr121786	transcription start site region 121786	1687 bp downstream