rs242077398 SNP Detail

Summary

• ID
  rs242077398
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:63082431 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGACTTCAG TGTTTGTTTT
  CTTTTATATA GACTATAAAG TTATCAAAAT CTTTAATAAG TTCAGCTACC TTGAACAGAT
  TTTGAATTCC TAATTTGTTC TCTGTGATGA TTCTGTACTC ATGGGGGGAT GGTAAAAGCT
  TTTTATTTTC ATTTACTTGT GTAAATTATA ATTCTTCCAT TTTATTCCCC ATTTTACTTT
  M
  GGTATGTAAT GTTTTGTTGC TTAGTTAGAA GTACTGTTTA ATCCCCTAGT TGCTGCTTCC
  ACGTTTTCAG TGCTAGCTTT TAAAGGGTTG TGAATGCCAG GTCTGACTAT GGAGAGAGAT
  CTAAGCACAA TGTAAAATAA TTTATCAGGT AATAAGCATT GGAAACATTT GGTCAGATTT
  CATGGTGTTT TTCTGGATGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323333179	CHEV_10_62709400	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242077398					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:63082431 () rs orientation: forward

Symbol	Name	Function Class
Gm66860	predicted gene, 66860	859 bp downstream
Herc4	hect domain and RLD 4	within coordinates
Rr432768	regulatory region 432768	1533 bp distal
Rr432769	regulatory region 432769	1686 bp distal
Rr432770	regulatory region 432770	861 bp proximal