rs242077658 SNP Detail

Summary

• ID
  rs242077658
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:69662876 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATTCTATAA AATATGGGTA GCTCTGTAAA CAAATCAAAA
  AAATCTTTGT GGAAATATAT TCTTTTAACC AATAAACTAT TATCCAAATA TACCCCCCCC
  M
  AAAAAAAAAG AAAGAAATTA AATGCAAGAA GAAAAATGCC AAGCAAGCAA TCTCCTGCCT
  TAATACTAAA CTAATAAATG CAACTTTCTG CCTATTTCC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CZECHII/EiJ	JF1/MsJ	PWK/PhJ
ss388952270	MGP_WTSI_13_69653635	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	A	C	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CZECHII/EiJ	JF1/MsJ	PWK/PhJ
rs242077658					SNP	C	C	C	C	C	C	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388952270	MGP_WTSI_13_69653635	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:69662876 () rs orientation: forward

Symbol	Name	Function Class
Gm48676	predicted gene, 48676	581 bp downstream
Rr273498	regulatory region 273498	1525 bp proximal
Rr277031	regulatory region 277031	125 bp proximal
Tent4a	terminal nucleotidyltransferase 4A	within coordinates