rs242080857 SNP Detail

Summary

• ID
  rs242080857
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:89588312 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTATGTTTA GGTCTTTAGT
  ATATTTTAAT GGCACAGGTA AGGGTCCAGC TTCATCCTTT TGAATGCGGA TATCTAGTTC
  TTAACACTGG TTGCTAGAGA AACTGCCTTT GCTGTGTTGT ATAATCATCT GACCGAATGT
  GCTAGTTCAG TCCAAGACCT TCTATGCTGT TCAGTGATCT GTACATCACT TTTTATGTCA
  S
  TATTGCAGTA ACCTGATTGT TGCTGCTTTG TAGTTGTTCC AGTCCTCACC CCCTACCATA
  CTTTTTAGAA TGTTTTGTTT ATCTGGAGTC CTTCCTTTGA GCTCCTTACG ATAACTTATT
  AACTTCTAGG CAATGATGAA CTTGAATGTC CTCCAACATC TATGTGTTTA CTCTTTGAAC
  TCAGGTGACT GAGCTGGAAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365813354	MGP_WTSI_5_89869478	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242080857					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365813354	MGP_WTSI_5_89869478	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:89588312 () rs orientation: forward

Symbol	Name	Function Class
Gc	vitamin D binding protein	within coordinates
Gm72766	predicted gene, 72766	within coordinates
Tssr47069	transcription start site region 47069	738 bp upstream
Tssr51709	transcription start site region 51709	1998 bp upstream
Tssr51710	transcription start site region 51710	807 bp upstream
Tssr51711	transcription start site region 51711	810 bp downstream
Tssr51712	transcription start site region 51712	1142 bp downstream
Tssr51713	transcription start site region 51713	1161 bp downstream
Tssr51714	transcription start site region 51714	1182 bp downstream
Tssr51715	transcription start site region 51715	1199 bp downstream
Tssr51716	transcription start site region 51716	1218 bp downstream
Tssr51717	transcription start site region 51717	1428 bp downstream