rs242081971 SNP Detail

Summary

• ID
  rs242081971
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152102582 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACTCTTTT CCTGCAGGCA
  AGTTGTCGGG GAGGGGCCGG GGCGCGCGCC CGGGCGCCGG GAGCCTTCGT GCGCGCGCCT
  CGCCGTCGCC TGCGGCGGTG CAGAGCGGCT GTCGCGCGCC GCGCTCCTCC CGCCCCCGGG
  CGCCCGCCAC CTGCGGAGAC CTCCCCGCCG GCCGCTGCCC GGCGCTCGCT CGCCGGCCCG
  S
  AGGCCGCTGC CAGCCCGCCC CGCCCGCCGC CGCCCCCTCT GCCCAGTTAC CCTCTCTGCA
  GACAGCTCCA CTTTCCTGTC GCCTGTGGCT GCAGAATCTT CCCCCAGTCT CCCAACAGAA
  CGCATAGCAT CTCTCGTGTC CGGGCGTCAT TTAGCCACCC ACTTGTCTAT TGGGAAGTTC
  TCCTCGTCAC CCTGGCTGCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SWR/J	WSB/EiJ
ss360265603	MGP_WTSI_3_152059909	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	G	G	C	C	G	C	G	G	G	C	C	G	C	G	G	C	C	G	G	C	G	G	C	G	G	G	C	G	C	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SWR/J	WSB/EiJ
rs242081971					SNP	C	C	G	G	C	C	G	C	G	G	G	C	C	G	C	G	G	C	C	G	G	C	G	G	C	G	G	G	C	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360265603	MGP_WTSI_3_152059909	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152102582 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13950	CpG island 13950			within coordinates
Rr587542	regulatory region 587542			1462 bp distal
Rr587543	regulatory region 587543			803 bp distal
Rr587544	regulatory region 587544			1023 bp distal
Rr587545	regulatory region 587545			963 bp distal
Rr587546	regulatory region 587546			874 bp distal
Rr587547	regulatory region 587547			241 bp distal
Rr587548	regulatory region 587548			684 bp distal
Rr587549	regulatory region 587549			649 bp distal
Rr587550	regulatory region 587550			227 bp distal
Rr587551	regulatory region 587551			within coordinates
Rr587552	regulatory region 587552			752 bp proximal
Tssr32410	transcription start site region 32410			1456 bp downstream
Tssr32411	transcription start site region 32411			886 bp downstream
Tssr32412	transcription start site region 32412			863 bp downstream
Tssr32413	transcription start site region 32413			551 bp downstream
Tssr32414	transcription start site region 32414			243 bp downstream
Zzz3	zinc finger, ZZ domain containing 3			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant