rs242089444 SNP Detail

Summary

• ID
  rs242089444
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127292301 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACGTTGAAA AAGGTTTCAG GAATACTCCT
  GGGCCAGGCG AAGTGCACAA GCTCGCATGA ATGGGTTCCC TGTGGGGCCA GCCCCTGTCC
  CCTGAAGTCG ATGTCCCGGT CCTTGGGGGA GGCGAGGACC TGGGGGACAA CCCCCCCCCC
  K
  GCACCCAGCA CCCACCTGAC GGATCCGCGG GGGGTTCTGC GGGGTGCAGG CCCCTCCCTC
  CGGGCCAGGG GAGGTGGGAG AAGCCATGTC CACGCTCTCG GAACTCCTTC CCTCGGTCAA
  GTCCGGCTGT CCCGCGTGTC CTCGTCTCTT                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320954685	CHEV_3_127201570	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242089444					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127292301 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Cpgi13791	CpG island 13791	within coordinates
Rr584800	regulatory region 584800	339 bp proximal
Tssr35576	transcription start site region 35576	334 bp downstream
Tssr35577	transcription start site region 35577	397 bp downstream
Tssr35578	transcription start site region 35578	424 bp downstream
Tssr35579	transcription start site region 35579	443 bp downstream