rs242097725 SNP Detail

Summary

• ID
  rs242097725
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135872945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGATTTGCA TACCCTTTTA
  GGGACGAGAA AGTTCCCAGC TGAAGCTGAG GGCTAGGGTG GCTTGGTTAG TAGGAAGGGC
  TGGGGTTGGG AATCCCCAAA AACATTGGAG GTTGAAAGCA AGGATCTATG ATCCTACTCT
  CAATTACAGG AGCCTCTCCT ACAGCCGGCA AGTCTGAGAC CGAATCTTTT TATTTCTTCA
  R
  TTCCTTGAAA CTTGGCAGCA GCTCTTAGAT GGATGCCGCA AATGATTGGG CGAACCTTCC
  TGGCGGCTCG GGGTCAAGTG TGGGGATGAA CTATTTCGTA TTTAAATAAA CTGCCTCCAT
  TAACTTCATG CTTTCTGGTC TGCCTTCCCC CCAGACTTCC AAACTTGGAG AAAGGAACCC
  TGCGGGTGAG GTGGGGGGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363384119	MGP_WTSI_4_135701549	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	A	A	G	A	A	A	A	A	A	A	A	G	G	A	A	A	A	A	A	G	G	A	A	A	G	G	A	A	G	A	G	A	A	A	G	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242097725					SNP	G	G	G	A	A	G	A	A	A	A	A	A	A	A	G	G	A	A	A	A	A	A	G	G	A	A	A	G	G	A	A	G	A	G	A	A	A	G	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363384119	MGP_WTSI_4_135701549	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135872945 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15098	CpG island 15098	480 bp distal
Cpgi15099	CpG island 15099	1899 bp proximal
Gm57159	predicted gene, 57159	591 bp upstream
Gm68296	predicted gene, 68296	1553 bp upstream
Id3	inhibitor of DNA binding 3	242 bp downstream
Rr377254	regulatory region 377254	545 bp upstream
Rr398607	regulatory region 398607	1717 bp downstream
Rr602286	regulatory region 602286	101 bp distal
Rr602287	regulatory region 602287	1063 bp proximal
Rr602288	regulatory region 602288	1564 bp proximal
Tssr39667	transcription start site region 39667	1802 bp downstream
Tssr39668	transcription start site region 39668	830 bp downstream
Tssr39669	transcription start site region 39669	1587 bp upstream