rs242100762 SNP Detail

Summary

• ID
  rs242100762
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116485570 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGTTGTT AAGTTAAATC
  CTGTACTTAA AACACTTTAA ATATTTTAGC TGTCTCTCTT TTTTTTTCTT TCATATATAT
  TAGGTAGGGA CTTACAGTCT ATCCCTGGCT AGCCTGAAAC TTGCTATTTA GACCCACTGA
  TCTCTAACCC ACAGACATCT GCCTGCCTGT GATTGCGAGG GCTGGGATTA CAGGTGAGCA
  S
  CACCACACAC GCCTTCTTTT ACAACCTTTT GTAACTCCAG TTCAAGGGCA TTCAATCAAT
  GCCTTCCTGT GACCACCAGA GCCACTAGGC ACACACATGG TACACATTTA TGTATGCAGA
  TACACTCATA CACATTAAAT AAAAGTAAAT GTGGCTGGAA AATTCGCTAG GAGGTTAGGA
  GCACTTGTTA TTCTTGCAAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321277623	CHEV_4_116300978	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242100762					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116485570 () rs orientation: forward

Symbol	Name	Function Class
A430091L06Rik	RIKEN cDNA A430091L06 gene	within coordinates
Cpgi14636	CpG island 14636	859 bp distal
Nasp	nuclear autoantigenic sperm protein (histone-binding)	432 bp upstream
Rr84401	regulatory region 84401	431 bp proximal
Rr84402	regulatory region 84402	1431 bp proximal
Rr84403	regulatory region 84403	1831 bp proximal
Rr99808	regulatory region 99808	within coordinates
Rr398403	regulatory region 398403	1373 bp downstream
Rr398404	regulatory region 398404	678 bp downstream
Rr398405	regulatory region 398405	209 bp downstream
Tssr42894	transcription start site region 42894	976 bp upstream
Tssr42895	transcription start site region 42895	870 bp upstream
Tssr42896	transcription start site region 42896	465 bp upstream
Tssr42897	transcription start site region 42897	417 bp upstream
Tssr42898	transcription start site region 42898	385 bp upstream