rs242104627 SNP Detail

Summary

• ID
  rs242104627
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:85920268 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAGAGAGCA GGCTTTGGGG
  CGTGCACAGA GAAGGGTGTG CGCGAACATG TTCGCGTGCT GTTGGAAGTG GCTTCGGCGA
  AGCTTCTAGA TGTGAGGATT TTTTTTTTCC TTTCCTCGAT TGAAGATGAC TTGCGACTAA
  CTTCAGGTAG TGCATTCTTA AGGGACGAGT ATTAGTCCGA CTGTCGTCTA TGAGTTTTTC
  Y
  TGCGCGTTGG CGCTGAGTGA AATCACCTCT CCCCATCCCT CAAGCAGCCT CCGCGGCTGA
  GTGAAAGGGC CAGGCCCTGA GATCTGTGTG GCTGGAGTTC TTAATGCTTG CTCCAGAGAT
  CTGATTCAAA AGTCCAGGCT GTTTGGTAAC CTTGCAGGGT CAGGAAGGAG AAGGAGATCT
  TGATAACCAC CCCGTACTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325486754	CHEV_17_86012180	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242104627					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:85920268 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9587	CpG island 9587	within coordinates
Cpgi9588	CpG island 9588	764 bp proximal
Cpgi9589	CpG island 9589	1839 bp proximal
Gm55781	predicted gene, 55781	1077 bp downstream
Gm55782	predicted gene, 55782	542 bp upstream
Gm55783	predicted gene, 55783	1822 bp upstream
Six3	sine oculis-related homeobox 3	768 bp upstream
Six3os1	SIX homeobox 3, opposite strand 1	within coordinates
Tssr146084	transcription start site region 146084	386 bp upstream
Tssr146085	transcription start site region 146085	592 bp upstream
Tssr149705	transcription start site region 149705	463 bp upstream
Tssr149706	transcription start site region 149706	214 bp downstream
Tssr149707	transcription start site region 149707	1962 bp downstream