rs242106470 SNP Detail

Summary

• ID
  rs242106470
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69275550 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACATC TTAAAATGTT CCCTCTTGCT
  R
  AGTGTGATGG CACATGCCTT TAATC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324083394	CHEV_12_70329763	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242106470					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69275550 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4690	CpG island 4690	490 bp distal
Gm47545	predicted gene, 47545	within coordinates
Pole2	polymerase (DNA directed), epsilon 2 (p59 subunit)	581 bp upstream
Rr403319	regulatory region 403319	462 bp downstream
Rr467012	regulatory region 467012	840 bp distal
Rr467013	regulatory region 467013	133 bp distal
Rr467014	regulatory region 467014	564 bp distal
Rr467015	regulatory region 467015	545 bp proximal
Rr467016	regulatory region 467016	637 bp proximal
Tssr113624	transcription start site region 113624	135 bp downstream
Tssr116494	transcription start site region 116494	592 bp upstream