rs242110009 SNP Detail

Summary

• ID
  rs242110009
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:4265701 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTGGAGGC CAGAGATAAA
  CACCAACATT TAGCTGGACC CATTTTTCTG CCTTGTTTTA TTTTCTGTTT TGCTTATTAT
  TACTATGTGG ACTGTGTAGG CTGGCCTTGA ACTTACAGAG ATCCACATGC CTCTGGCTTC
  TAAGAGCTGG GATTAACAGC AAGTGCTACT ACACTTGGCT ATTTTTTGGG GGACAGGATC
  Y
  CTCACAGAAA CTGATGTTTG ACACTTCCTC TGCTGAGCAC CAGAAACACA CCTCTTTTCT
  TCCCACCCAG AGCTGAGGTT ACAGTGATAC ATCAAGATCA GCTTTTACAT AGGTGCTGAA
  GTTTCAAACT CAGGACCTCA TATTTGTGCA GCAAGCACTT TAGCACACCA AGCTACCTTT
  CCAGCCCATT CATGTCTAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373521042	MGP_WTSI_8_4215701	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242110009					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373521042	MGP_WTSI_8_4215701	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:4265701 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20044	CpG island 20044	1473 bp distal
Cpgi20045	CpG island 20045	746 bp distal
Cpgi20046	CpG island 20046	654 bp proximal
Gm64374	predicted gene, 64374	163 bp downstream
Prr36	proline rich 36	within coordinates
Rr658992	regulatory region 658992	1833 bp distal
Rr658993	regulatory region 658993	1601 bp proximal
Tssr80244	transcription start site region 80244	1951 bp upstream
Tssr80245	transcription start site region 80245	1605 bp upstream
Tssr80246	transcription start site region 80246	1573 bp upstream
Tssr80247	transcription start site region 80247	1398 bp upstream
Tssr80248	transcription start site region 80248	1344 bp upstream
Tssr80249	transcription start site region 80249	1321 bp upstream
Tssr80250	transcription start site region 80250	1216 bp upstream
Tssr80251	transcription start site region 80251	1118 bp upstream
Tssr80252	transcription start site region 80252	1077 bp upstream
Tssr80253	transcription start site region 80253	971 bp upstream
Tssr80254	transcription start site region 80254	911 bp upstream
Tssr80255	transcription start site region 80255	304 bp downstream
Tssr80256	transcription start site region 80256	1278 bp downstream
Tssr80257	transcription start site region 80257	1317 bp downstream
Tssr80258	transcription start site region 80258	1412 bp downstream
Tssr80259	transcription start site region 80259	1432 bp downstream
Tssr80260	transcription start site region 80260	1478 bp downstream
Tssr80261	transcription start site region 80261	1560 bp downstream
Tssr80262	transcription start site region 80262	1765 bp downstream