rs242111406 SNP Detail

Summary

• ID
  rs242111406
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:24559201 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCATTCTTG CTGGTCGAGG
  GCGGATGCGA CAGCCTTTCT TTTTATGTCT TAACAGGAAG ATATCTGGTC AAGTGGATGA
  GCGTGGTATA AAATTGAGAC CTGTAGAACC ATGAGGAATG ACATACTCAT CTAACCTGGA
  CTCTCACGCT TAGAGTTATG AATCATACAT CTTTTTTCTT TTCAATCCTT AACACACTAG
  K
  GGAGGGGAGA TAAGGAGGAG GAAAGAAAAG AAGTTATATT CATACTTAAC AAAATATTCA
  TCTCATTTAA ATGAAAAAAA TAGAGTCACT GTAGGCTTGG GAGATAGTTC ATTTGATAAA
  ATGCTTGCCT TCCATCTCCA GCTCCTGAAT TCAATGCCCA GACACCACGT AAGAGAAGCT
  GTCCTTGCTC AAAGTTCCAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324295902	CHEV_13_24467087	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242111406					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:24559201 () rs orientation: forward

Symbol	Name	Function Class
Cmah	cytidine monophospho-N-acetylneuraminic acid hydroxylase	within coordinates
Gm11342	predicted gene 11342	within coordinates
Rr476038	regulatory region 476038	157 bp distal
Rr476039	regulatory region 476039	123 bp proximal
Rr476040	regulatory region 476040	722 bp proximal
Tssr4016	transcription start site region 4016	832 bp upstream
Tssr118891	transcription start site region 118891	1701 bp downstream
Tssr118892	transcription start site region 118892	816 bp upstream
Tssr118893	transcription start site region 118893	852 bp upstream
Tssr118894	transcription start site region 118894	916 bp upstream
Tssr118895	transcription start site region 118895	950 bp upstream
Tssr121784	transcription start site region 121784	724 bp downstream
Tssr121785	transcription start site region 121785	744 bp downstream
Tssr121786	transcription start site region 121786	804 bp downstream