rs242111878 SNP Detail

Summary

• ID
  rs242111878
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:84339405 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCGGGGCCG CGGGCCGGAG
  GCGGCGTGGG GGCGGGGCCG GATCTCGGAG AGTGCTATTA TTGGTCAAGG CATTTGAGGG
  GCGTGGCACA GAGGCGCTGC TTTTCTCTCG GCCACGCCCC TGCCTCGGCC AGGTCAGCGG
  GCTAGGTTAG CTTTTTGATG TTGCCTCAGG AGCAAGAGGG CTCTGGTGCA GACTTGGGGG
  R
  CGGCGAGGGG ATGGGGTGTC TGATGACGTA GCTCCGGGCT CTGCATCCTC CCAGGGATAG
  ACTACCCTTG TCTAGAGCTG GTGTTCCACC TGCGTAGTTT GAGAGACGAC ATAGATTGAG
  ATTCTGTTGC CCAGGCCCCT AGAAGACCAG GAGGGCCAGC CCAAAGTGCC AGGTCTGAAC
  TCTGCCCTGT CCTGAACCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	ZALENDE/EiJ
ss372145367	MGP_WTSI_7_91838707	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	ZALENDE/EiJ
rs242111878					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372145367	MGP_WTSI_7_91838707	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:84339405 () rs orientation: forward

Symbol	Name	Function Class
2610206C17Rik	RIKEN cDNA 2610206C17 gene	within coordinates
Cpgi19383	CpG island 19383	within coordinates
Rr400423	regulatory region 400423	82 bp downstream
Rr650631	regulatory region 650631	1164 bp distal
Rr650632	regulatory region 650632	443 bp distal
Rr650633	regulatory region 650633	251 bp distal
Rr650634	regulatory region 650634	within coordinates
Tssr73444	transcription start site region 73444	376 bp upstream
Tssr73445	transcription start site region 73445	363 bp upstream
Tssr73446	transcription start site region 73446	298 bp upstream
Tssr73447	transcription start site region 73447	279 bp upstream
Tssr73448	transcription start site region 73448	258 bp upstream
Tssr73449	transcription start site region 73449	233 bp upstream
Tssr73450	transcription start site region 73450	206 bp upstream
Zfand6	zinc finger, AN1-type domain 6	181 bp upstream