rs242113424 SNP Detail

Summary

• ID
  rs242113424
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117580459 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCATGGAAA AAAAATTAAC
  TGATTATTGG CTACAGGCAA GGCCTCCTGC TTGCACAGGA AGCTAAAAGC CTAGAAAACT
  CTCTACGGAC ACAGACAAGT TATCAGAGGC CCATGAGCAA GTCGTAACAC CAACACTTCT
  TCTGAGTTTA AAATATGCAC ATCTGAATTT TTTTCATGTT CAAAAGTTTG GAAGTGTGTG
  Y
  GTTTCACCCA AGTGACTTTA TAATCAAAGA GTAAATGACA CATGCGACCG ATGAACTTAG
  GAAGCAAAAC CTTACTGCTC ATTTTGTGAA GACTTCCAAG AAGTTTGTCC CCAGCTGCGC
  TTAAGCAGGG GTACCGTGCG CTTACAATTG GACACTTGGT GGGCATCGCA CACCTGAGCT
  GCTGTCTCCT CTGCTCTCGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323499167	CHEV_10_117181610	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242113424					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117580459 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2238	CpG island 2238	1039 bp proximal
Cpgi2239	CpG island 2239	1742 bp proximal
Gm66856	predicted gene, 66856	1927 bp upstream
Rr439608	regulatory region 439608	97 bp distal
Rr439609	regulatory region 439609	710 bp distal
Rr439610	regulatory region 439610	1388 bp proximal
Rr439611	regulatory region 439611	1801 bp proximal
Rr439612	regulatory region 439612	1938 bp proximal
Slc35e3	solute carrier family 35, member E3	within coordinates
Tssr99471	transcription start site region 99471	1777 bp downstream
Tssr99472	transcription start site region 99472	1802 bp downstream