rs242116155 SNP Detail

Summary

• ID
  rs242116155
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13262406 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTGCTGAG CCATCTCTCC
  AGCCCTCTTT ATTTTTCTTT TATGAGTGTT TTGATGCATA TACATGCACC ACAAGCATGA
  AGTACCAAAG GAGGCCAGAG GAATGCATCG GCACCCCTGG GAATGGAGTT ACAGACAGTT
  GTAAGGCACT ATATGCTGGG AACTGAGCCC AGGTCCTCTA CAAGAGCAGC AAATGCTCTT
  S
  ACCACAGAAC TGTGTCTTAA GTACCATGCC TTTTAATTCT GGTAAATCCT CACATTCTCC
  TAGCAACATA GAAATATGAC CTATATACAA TAAAACTCAC CCACTTGATG TTTCCAGTTT
  TCAGTGGCTC TGCTGTGTGA GCCTCAGAAC AGTGTATCTT TCAATGCCCA GATGGCTGCA
  TGACCCTAAA CTCTTCCTCG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322505123	CHEV_8_13212406	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242116155					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13262406 () rs orientation: forward

Symbol	Name	Function Class
Gm63815	predicted gene, 63815	within coordinates
Rr368495	regulatory region 368495	1061 bp upstream
Rr368496	regulatory region 368496	1566 bp upstream
Rr659886	regulatory region 659886	599 bp proximal
Rr659887	regulatory region 659887	1036 bp proximal
Rr659888	regulatory region 659888	1627 bp proximal
Rr659889	regulatory region 659889	1677 bp proximal