rs242116346 SNP Detail

Summary

• ID
  rs242116346
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:41274775 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCTTTCCT CTAAAAATGT
  TGAGCTCTTC TTGGTTTTCA GAAAACTTTA GAAATCTTAT GATTTTCTCT CTTACATATG
  TGCATGTGCG AACACACACA CATGTACACG CATGCACACA CACACACACA CACACACACA
  CACTCACACA CTCTGTGTTC AGAGCCTGGG TCAGTACTGG GGTCTAGCTT CTTCTCTATA
  Y
  ATAATGTGTG CCCTATTCCT AAGTAGATGC TACCTGTTTT GTGACATGAT GACTTAGCAA
  TAAAGACACA TGTGAGGCTT CCATTCTAAT CTAAATGATG TGTATTTTTT TTAATTAGGT
  ATTTTCCTCA ATTATATTTC CAATGTTATC CCAAAAGTCC CCCATACCCT CCCCCCCCAC
  TCCCCTAACC ACCCATTCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320245466	CHEV_2_41240283	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242116346					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:41274775 () rs orientation: forward

Symbol	Name	Function Class
D2Dcr134	DNA Segment, Chr 2, Derry C. Roopenian 134	642 bp distal
Lrp1b	low density lipoprotein-related protein 1B	within coordinates
Rr556252	regulatory region 556252	1744 bp distal