rs242116615 SNP Detail

Summary

• ID
  rs242116615
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:11503182 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAACAACA TAACTGTTGC
  GCAACAACAA AAAATATATA TCAAAAGACA TCAAATTTTT TCCACCTGGT GTGACACTAC
  AAAAAAAAAA GCAAAACAGT ACAGGAGAAA ATATTTCTGA GTCACAGATA ACAAAAGGCA
  ATCATAGCTG CTGTGTATGT ATAGCATATA TGTGTATGTA CTGGAAACTT AACAATTGAA
  Y
  GATAAAAAGA CAAACAGAAA TTGGAACATA GGCAATGATA TGAGACTACA CTTCTCCAGT
  GCCTATATAT GGGTGACCAA TCACACATGA GAAGATATTC AGTATCATTG ATTACTATGC
  AAATTAAAAA CACAAGGAAT CATTTGATAC ACAGGAGGAT AGCTACAGAC AGAAAGACAA
  ACAAGAACCA ATATTGATGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324264581	CHEV_13_11580563	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242116615					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:11503182 () rs orientation: forward

Symbol	Name	Function Class
D13Ertd463e	DNA segment, Chr 13, ERATO Doi 463, expressed	179 bp distal
Rr387978	regulatory region 387978	1489 bp upstream