rs242119672 SNP Detail

Summary

• ID
  rs242119672
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:93612362 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAGGGATGG AGGAGAGTGG ATGAACTGCC TGCTTCCTGG
  CATGAACACC TCCTAACTCT AGCATTGGGA AGAGGGAGCA GGGATAGGCA GACCCCTGTG
  R
  CTCTTCAGCC AGAGAGTCTA GACGGCCAGT GAGCTCTGGG TTCAGGAAGA GACTGTGTCT
  CAAAAACAAA TGAAGTGGAA AACAGTAGAG GAAGACATC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322805309	CHEV_8_95409633	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242119672					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:93612362 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lpcat2	lysophosphatidylcholine acyltransferase 2			Intron
				Noncoding-Transcript-Variant
Tssr78766	transcription start site region 78766			131 bp upstream
Tssr78767	transcription start site region 78767			1666 bp upstream
Tssr78768	transcription start site region 78768			1715 bp upstream