rs242124548 SNP Detail

Summary

• ID
  rs242124548
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:32126940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGAAGAAAC GCTCGTAGGT
  TTTGGAGTGC CAGATTTGAG AGCCCTCCTG GGGTCTGGGA TCCGGCTTAG GGGCGGCGCG
  CTAGGGACGG TGGATGTTCG GATCCTGGCT GAGCAAGTCG TTTCCAGGGC GGCCTCTTGT
  AAAAGCCAGA GTGGGAAGAA CTGTAGAGAA AGAACGGGCT CGGGGCACAA GCAACTCTAG
  K
  AGGAGAGGAA TGCCTCCAGA AGAGGGAAAA GTCCATCCAG GTCACTGGGC TATGACAGTG
  CCCAGAGCTC CTCAGGGTCT TAGTTTTCAA CCACATTGGG AAGGGACAGG AGAGGCCACT
  TCATTCATTA GCAGCCTTGT TCCTAGCAAG TGCCCAGCAG GTGTTTTTGG AATGACTTGT
  AGAAATGAGT ATCCAGTTCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353553923	MGP_WTSI_2_32092448	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242124548					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353553923	MGP_WTSI_2_32092448	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:32126940 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11499	CpG island 11499			within coordinates
Gm13610	predicted gene 13610			440 bp upstream
Pomt1	protein-O-mannosyltransferase 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr554847	regulatory region 554847			545 bp distal
Rr554848	regulatory region 554848			328 bp distal
Rr554849	regulatory region 554849			476 bp proximal
Tssr17254	transcription start site region 17254			333 bp downstream
Tssr17255	transcription start site region 17255			306 bp downstream
Tssr17256	transcription start site region 17256			227 bp downstream
Tssr17257	transcription start site region 17257			369 bp upstream
Tssr23466	transcription start site region 23466			565 bp upstream
Tssr23467	transcription start site region 23467			555 bp upstream
Tssr23468	transcription start site region 23468			535 bp upstream