rs242130683 SNP Detail

Summary

• ID
  rs242130683
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:59738151 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCAGTGTTG GATCATTTCT TCCCATAGCT
  TTGCTTTGGT CTGAGAAAGA ACTTTGCtgt gtacacgtgt ttctgattgg gccagaaaag
  gctgtcaggt gtcccttcat tcttcctatt cctttgaggc agactctccc cctggtttcc
  K
  gggctaggcc agaaatcctc aaacctcatt gatccttctg cctcccagct gaggtttgtt
  taggcacaca tggaattgct gacttgttat gtaggtacag ggatcagact tccacagctc
  atgattgtat agccagtaca cttaactgct                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319739032	CHEV_1_59755836	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242130683					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:59738151 () rs orientation: forward

Symbol	Name	Function Class
Nop58	NOP58 ribonucleoprotein	within coordinates
Rr371359	regulatory region 371359	within coordinates
Rr411703	regulatory region 411703	878 bp distal
Tssr6887	transcription start site region 6887	917 bp downstream
Tssr11836	transcription start site region 11836	1213 bp upstream