rs242138898 SNP Detail

Summary

• ID
  rs242138898
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107148446 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTATTGGGC CATCCATCTT
  CTCTCTACAA TAATAAAAAC TAGTGTTTTC CAAGGAATGT TTTCTAGTAT GCTAATTCAG
  GATGAGCATC TCCAACCCAA AACTCTAAAA TCTAGACGTC TCCAAAGTAG AGAACTTTCT
  GACATAATGT GACCCATCCA AAATTCTACA CAGTAGAACC TTGTTGCATG CACAAAACTA
  Y
  TTAAAATGCT ATAGAAAACT GCCTTTAGGT ATGTGTATAA GATGATCATG AAACAGACAG
  AATTCAAGTT TAGACTTAAA CCTCATCTAA GATGTACCAT TGTGTACATG CAAATATTCA
  GATTTGGGGG GGGAGACCCT CAAACCTGGG ACACTCAAGG ACTTCAGAGA AGAGGTATTC
  AGTCTACAGT ATTACATGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320864898	CHEV_3_107044048	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242138898					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107148446 () rs orientation: forward

Symbol	Name	Function Class
Gm66085	predicted gene, 66085	736 bp upstream
Prok1	prokineticin 1	1423 bp upstream
Rr582947	regulatory region 582947	394 bp proximal
Rr582948	regulatory region 582948	747 bp proximal
Tssr31192	transcription start site region 31192	659 bp upstream
Tssr31193	transcription start site region 31193	730 bp upstream
Tssr31194	transcription start site region 31194	785 bp upstream